ARROW-5511: [Packaging] Enable Flight in Conda packages #4473

ghost · 2019-06-04T22:30:29Z

No description provided.

pitrou · 2019-06-05T17:14:59Z

pitrou · 2019-06-06T13:02:46Z

Does it work? I get the following error here:

$ conda build dev/tasks/conda-recipes/arrow-cpp/
No numpy version specified in conda_build_config.yaml.  Falling back to default numpy value of 1.11
WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml.  Falling back to default numpy value of 1.11
Adding in variants from internal_defaults
INFO:conda_build.variants:Adding in variants from internal_defaults
Attempting to finalize metadata for arrow-cpp
INFO:conda_build.metadata:Attempting to finalize metadata for arrow-cpp
Traceback (most recent call last):
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/utils.py", line 1321, in _increment
    last_version = str(int(version) + 1) + suffix
ValueError: invalid literal for int() with base 10: 'none'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/antoine/miniconda3/bin/conda-build", line 11, in <module>
    sys.exit(main())
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py", line 456, in main
    execute(sys.argv[1:])
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py", line 447, in execute
    verify=args.verify, variants=args.variants)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/api.py", line 208, in build
    notest=notest, need_source_download=need_source_download, variants=variants)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/build.py", line 2314, in build_tree
    notest=notest,
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/build.py", line 1324, in build
    output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/render.py", line 735, in expand_outputs
    for (output_dict, m) in _m.copy().get_output_metadata_set(permit_unsatisfiable_variants=False):
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/metadata.py", line 2038, in get_output_metadata_set
    bypass_env_check=bypass_env_check)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/metadata.py", line 715, in finalize_outputs_pass
    output_d = om.get_rendered_output(metadata.name()) or {'name': metadata.name()}
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/metadata.py", line 2095, in get_rendered_output
    permit_undefined_jinja=permit_undefined_jinja):
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/metadata.py", line 2084, in get_rendered_outputs_section
    allow_no_other_outputs=permit_undefined_jinja)) or
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/metadata.py", line 1525, in _get_contents
    rendered = template.render(environment=env)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/jinja2/asyncsupport.py", line 76, in render
    return original_render(self, *args, **kwargs)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/jinja2/environment.py", line 1008, in render
    return self.environment.handle_exception(exc_info, True)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/jinja2/environment.py", line 780, in handle_exception
    reraise(exc_type, exc_value, tb)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/jinja2/_compat.py", line 37, in reraise
    raise value.with_traceback(tb)
  File "/home/antoine/arrow/dev/dev/tasks/conda-recipes/arrow-cpp/meta.yaml", line 13, in top-level template code
    # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/jinja_context.py", line 324, in pin_subpackage
    exact, permit_undefined_jinja)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/jinja_context.py", line 295, in pin_subpackage_against_outputs
    max_pin))
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/utils.py", line 1351, in apply_pin_expressions
    v = _increment(v, alpha_ver)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/utils.py", line 1323, in _increment
    last_version = chr(ord(version) + 1)
TypeError: ord() expected a character, but string of length 4 found

ghost · 2019-06-06T14:20:24Z

It's because ARROW_VERSION needs to be set (the CI scripts do so) env ARROW_VERSION=0.14.0 conda build dev/tasks/conda-recipes/arrow-cpp/

pitrou · 2019-06-06T14:25:49Z

Now I get another error:

$ ARROW_VERSION=0.14.0 conda build dev/tasks/conda-recipes/arrow-cpp/
No numpy version specified in conda_build_config.yaml.  Falling back to default numpy value of 1.11
WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml.  Falling back to default numpy value of 1.11
Adding in variants from internal_defaults
INFO:conda_build.variants:Adding in variants from internal_defaults
Attempting to finalize metadata for arrow-cpp
INFO:conda_build.metadata:Attempting to finalize metadata for arrow-cpp
Collecting package metadata: ...working... done
Solving environment: ...working... failed

Leaving build/test directories:
  Work:
 /home/antoine/miniconda3/conda-bld/work 
  Test:
 /home/antoine/miniconda3/conda-bld/test_tmp 
Leaving build/test environments:
  Test:
source activate  /home/antoine/miniconda3/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_ 
  Build:
source activate  /home/antoine/miniconda3/conda-bld/_build_env 


Traceback (most recent call last):
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/environ.py", line 753, in get_install_actions
    actions = install_actions(prefix, index, specs, force=True)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda/common/io.py", line 88, in decorated
    return f(*args, **kwds)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda/plan.py", line 473, in install_actions
    txn = solver.solve_for_transaction(prune=prune, ignore_pinned=not pinned)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line 107, in solve_for_transaction
    force_remove, force_reinstall)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line 145, in solve_for_diff
    force_remove)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line 242, in solve_final_state
    ssc = self._run_sat(ssc)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda/common/io.py", line 88, in decorated
    return f(*args, **kwds)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line 475, in _run_sat
    conflicting_specs = ssc.r.get_conflicting_specs(tuple(final_environment_specs))
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda/resolve.py", line 852, in get_conflicting_specs
    reduced_index = self.get_reduced_index(specs)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda/common/io.py", line 88, in decorated
    return f(*args, **kwds)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda/resolve.py", line 356, in get_reduced_index
    specs, features = self.verify_specs(specs)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda/resolve.py", line 244, in verify_specs
    raise ResolvePackageNotFound(bad_deps)
conda.exceptions.ResolvePackageNotFound: 
  - re2
  - clangdev=7

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/antoine/miniconda3/bin/conda-build", line 11, in <module>
    sys.exit(main())
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py", line 456, in main
    execute(sys.argv[1:])
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py", line 447, in execute
    verify=args.verify, variants=args.variants)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/api.py", line 208, in build
    notest=notest, need_source_download=need_source_download, variants=variants)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/build.py", line 2314, in build_tree
    notest=notest,
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/build.py", line 1324, in build
    output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/render.py", line 735, in expand_outputs
    for (output_dict, m) in _m.copy().get_output_metadata_set(permit_unsatisfiable_variants=False):
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/metadata.py", line 2038, in get_output_metadata_set
    bypass_env_check=bypass_env_check)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/metadata.py", line 715, in finalize_outputs_pass
    output_d = om.get_rendered_output(metadata.name()) or {'name': metadata.name()}
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/metadata.py", line 2095, in get_rendered_output
    permit_undefined_jinja=permit_undefined_jinja):
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/metadata.py", line 2084, in get_rendered_outputs_section
    allow_no_other_outputs=permit_undefined_jinja)) or
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/metadata.py", line 1525, in _get_contents
    rendered = template.render(environment=env)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/jinja2/asyncsupport.py", line 76, in render
    return original_render(self, *args, **kwargs)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/jinja2/environment.py", line 1008, in render
    return self.environment.handle_exception(exc_info, True)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/jinja2/environment.py", line 780, in handle_exception
    reraise(exc_type, exc_value, tb)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/jinja2/_compat.py", line 37, in reraise
    raise value.with_traceback(tb)
  File "/home/antoine/arrow/dev/dev/tasks/conda-recipes/arrow-cpp/meta.yaml", line 46, in top-level template code
    - glog
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/jinja_context.py", line 230, in pin_compatible
    pins, _, _ = get_env_dependencies(m, 'host', m.config.variant)
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/render.py", line 143, in get_env_dependencies
    channel_urls=tuple(m.config.channel_urls))
  File "/home/antoine/miniconda3/lib/python3.7/site-packages/conda_build/environ.py", line 755, in get_install_actions
    raise DependencyNeedsBuildingError(exc, subdir=subdir)
conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {'clangdev=7', 're2'}

ghost · 2019-06-06T14:34:02Z

Ah sorry, forgot conda-forge is needed, and there appears to be a config file to pin certain packages: env ARROW_VERSION=0.14.0 conda build dev/tasks/conda-recipes/arrow-cpp/ -c conda-forge -m dev/tasks/conda-recipes/variants/osx_python3.7.yaml (of course use linux_python3.7.yaml or your desired config)

pitrou · 2019-06-06T15:07:46Z

Thanks :-) It finally worked.

kszucs · 2019-06-11T11:21:59Z

Looks good to me, but let me check via crossbow.

pitrou · 2019-06-24T17:43:10Z

@ursabot crossbow build -g conda

ursabot · 2019-06-24T17:43:11Z

No such command "build".

pitrou · 2019-06-24T17:43:29Z

@ursabot crossbow package -g conda

ursabot · 2019-06-24T17:43:42Z

AMD64 Conda Crossbow (#24815) builder failed.

Revision: 5685d10c4765b1bf5b34722339825d7f233b51e4

Crossbow: 'python crossbow.py ...' step's stderr:

Traceback (most recent call last):
  File "crossbow.py", line 937, in <module>
    crossbow(obj={}, auto_envvar_prefix='CROSSBOW')
  File "/opt/conda/lib/python3.7/site-packages/click/core.py", line 764, in __call__
    return self.main(*args, **kwargs)
  File "/opt/conda/lib/python3.7/site-packages/click/core.py", line 717, in main
    rv = self.invoke(ctx)
  File "/opt/conda/lib/python3.7/site-packages/click/core.py", line 1137, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/opt/conda/lib/python3.7/site-packages/click/core.py", line 956, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/opt/conda/lib/python3.7/site-packages/click/core.py", line 555, in invoke
    return callback(*args, **kwargs)
  File "/opt/conda/lib/python3.7/site-packages/click/decorators.py", line 17, in new_func
    return f(get_current_context(), *args, **kwargs)
  File "crossbow.py", line 761, in submit
    tasks[name] = Task(artifacts=artifacts, **task)
TypeError: __init__() missing 1 required positional argument: 'ci'

pitrou · 2019-06-24T17:46:24Z

@ursabot crossbow package -g conda

ursabot · 2019-06-24T17:49:11Z

AMD64 Conda Crossbow (#24824) builder has been succeeded.

Revision: 584ba8404c95810b4cf4e59209a4e438036989df

Submitted crossbow builds: ursa-labs/crossbow @ ursabot-58

Task	Status
conda-win-vs2015-py37
conda-osx-clang-py36
conda-linux-gcc-py36
conda-win-vs2015-py36
conda-linux-gcc-py37
conda-osx-clang-py27
conda-linux-gcc-py27
conda-osx-clang-py37

pitrou · 2019-06-24T18:19:14Z

@ursabot crossbow package -g conda

ursabot · 2019-06-24T18:23:00Z

AMD64 Conda Crossbow (#24851) builder has been succeeded.

Revision: eda0f67ff60f6d0e5fd51d2e0042a2b34b973cf5

Submitted crossbow builds: ursa-labs/crossbow @ ursabot-59

Task	Status
conda-linux-gcc-py36
conda-osx-clang-py27
conda-linux-gcc-py27
conda-osx-clang-py37
conda-win-vs2015-py36
conda-osx-clang-py36
conda-win-vs2015-py37
conda-linux-gcc-py37

pitrou · 2019-06-24T18:29:55Z

Unfortunately the crossbow conda builds seem broken on git master. I don't think we can merge this until they're fixed :-/ @wesm @kszucs

kszucs · 2019-06-24T18:48:21Z

I'm working on it #4649

pitrou · 2019-06-26T11:58:31Z

@kszucs Could you help rebasing this and fixing conflicts? Thanks :-)

ghost · 2019-06-26T12:00:56Z

I just rebased this.

kszucs · 2019-06-26T12:01:17Z

I've just fetched it :)
Let's fire the packaging tasks.

kszucs · 2019-06-26T12:02:10Z

@ursabot crossbow package -g conda

ursabot · 2019-06-26T12:05:34Z

AMD64 Conda Crossbow (#26191) builder has been succeeded.

Revision: f1e8b5db3fc27ef8ba6673df5fb0ae911647e3aa

Submitted crossbow builds: ursa-labs/crossbow @ ursabot-77

Task	Status
conda-linux-gcc-py27
conda-linux-gcc-py36
conda-linux-gcc-py37
conda-osx-clang-py27
conda-osx-clang-py36
conda-osx-clang-py37
conda-win-vs2015-py36
conda-win-vs2015-py37

pitrou · 2019-06-26T12:06:27Z

@lihalite Can you add a test that pyarrow.flight imports?

ghost · 2019-06-26T12:09:44Z

@pitrou done.

pitrou · 2019-06-26T12:10:45Z

@ursabot crossbow package -g conda

ursabot · 2019-06-26T12:13:14Z

AMD64 Conda Crossbow (#26209) builder has been succeeded.

Revision: 689d61de2bcf2859cb44cd08f58e9072e0c73214

Submitted crossbow builds: ursa-labs/crossbow @ ursabot-79

Task	Status
conda-linux-gcc-py27
conda-linux-gcc-py36
conda-linux-gcc-py37
conda-osx-clang-py27
conda-osx-clang-py36
conda-osx-clang-py37
conda-win-vs2015-py36
conda-win-vs2015-py37

pitrou · 2019-06-26T12:14:41Z

Not sure what happened but this build fails on uriparser: https://dev.azure.com/ursa-labs/crossbow/_build/results?buildId=123
@kszucs

kszucs · 2019-06-26T14:05:29Z

@ursabot crossbow package conda-linux-gcc-py37

kszucs · 2019-06-26T14:50:45Z

@ursabot crossbow package conda-linux-gcc-py37

ursabot · 2019-06-26T14:55:03Z

AMD64 Conda Crossbow (#26379) builder has been succeeded.

Revision: 7ca809be7c46a1f0bf299c4f143ab5dc950e8c61

Submitted crossbow builds: ursa-labs/crossbow @ ursabot-84

Task	Status
conda-linux-gcc-py37

kszucs · 2019-06-27T10:45:14Z

@ursabot crossbow package conda-linux-gcc-py37

ursabot · 2019-06-27T10:45:32Z

AMD64 Conda Crossbow (#27029) builder has been succeeded.

Revision: f612508

Submitted crossbow builds: ursa-labs/crossbow @ ursabot-90

Task	Status
conda-linux-gcc-py37

xhochy · 2019-06-27T10:47:58Z

dev/tasks/conda-recipes/arrow-cpp/build.sh

    -DCMAKE_INSTALL_LIBDIR=$PREFIX/lib \
    -DLLVM_TOOLS_BINARY_DIR=$PREFIX/bin \
    -DARROW_DEPENDENCY_SOURCE=SYSTEM \
+    -Duriparser_SOURCE=BUNDLED \


Note that we need to package uriparser before we can release this on conda-forge; there bundling of thirdparties is not really accepted.

Thanks for the update, didn't know that.

Even for small private dependencies?

I think we can temporarily statically-link uriparser, we had a bunch of stuff statically linked on conda-forge for a long time before the CMake refactor

kszucs · 2019-06-27T11:18:27Z

@ursabot crossbow package -g conda

ursabot · 2019-06-27T11:18:47Z

AMD64 Conda Crossbow (#27040) builder has been succeeded.

Revision: e764a59

Submitted crossbow builds: ursa-labs/crossbow @ ursabot-91

Task	Status
conda-linux-gcc-py27
conda-linux-gcc-py36
conda-linux-gcc-py37
conda-osx-clang-py27
conda-osx-clang-py36
conda-osx-clang-py37
conda-win-vs2015-py36
conda-win-vs2015-py37

kszucs · 2019-06-27T13:44:52Z

@ursabot crossbow package conda-osx-clang-py27 conda-osx-clang-py36

ursabot · 2019-06-27T13:49:13Z

AMD64 Conda Crossbow (#27173) builder has been succeeded.

Revision: c0b95ac

Submitted crossbow builds: ursa-labs/crossbow @ ursabot-93

Task	Status
conda-osx-clang-py27
conda-osx-clang-py36

kszucs · 2019-06-27T14:29:44Z

Conda probably doesn't move the submodules to the testing directory, skipping the tests instead.

kszucs · 2019-06-27T14:33:06Z

@ursabot crossbow package -g conda

ursabot · 2019-06-27T14:33:25Z

AMD64 Conda Crossbow (#27225) builder has been succeeded.

Revision: c1baa4c

Submitted crossbow builds: ursa-labs/crossbow @ ursabot-94

Task	Status
conda-linux-gcc-py27
conda-linux-gcc-py36
conda-linux-gcc-py37
conda-osx-clang-py27
conda-osx-clang-py36
conda-osx-clang-py37
conda-win-vs2015-py36
conda-win-vs2015-py37

codecov-io · 2019-06-27T17:19:38Z

Codecov Report

Merging #4473 into master will decrease coverage by 21.45%.
The diff coverage is 100%.

@@             Coverage Diff             @@
##           master    #4473       +/-   ##
===========================================
- Coverage   86.42%   64.96%   -21.46%     
===========================================
  Files         989      482      -507     
  Lines      137498    63194    -74304     
  Branches     1418        0     -1418     
===========================================
- Hits       118834    41057    -77777     
- Misses      18302    22137     +3835     
+ Partials      362        0      -362

Impacted Files	Coverage Δ
python/pyarrow/tests/test_flight.py	`70.58% <100%> (+0.06%)`	⬆️
cpp/src/arrow/util/memory.h	`0% <0%> (-100%)`	⬇️
cpp/src/gandiva/date_utils.h	`0% <0%> (-100%)`	⬇️
cpp/src/arrow/util/memory.cc	`0% <0%> (-100%)`	⬇️
cpp/src/arrow/filesystem/util-internal.cc	`0% <0%> (-100%)`	⬇️
cpp/src/arrow/util/sse-util.h	`0% <0%> (-100%)`	⬇️
cpp/src/gandiva/decimal_type_util.h	`0% <0%> (-100%)`	⬇️
cpp/src/arrow/compute/logical_type.h	`0% <0%> (-100%)`	⬇️
cpp/src/parquet/hasher.h	`0% <0%> (-100%)`	⬇️
cpp/src/gandiva/basic_decimal_scalar.h	`0% <0%> (-100%)`	⬇️
... and 745 more

Continue to review full report at Codecov.

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wesm · 2019-06-27T21:27:07Z

Ugly mess of conda-build warnings in the Windows build

https://gist.github.com/wesm/fdbdcfb0882ecba6d27d563566c90532

I'm looking at the Windows build script

wesm · 2019-06-27T21:30:54Z

@ursabot crossbow package conda-win-vs2015-py36 conda-win-vs2015-py37

wesm · 2019-06-27T21:32:38Z

@ursabot crossbow package conda-win-vs2015-py36 conda-win-vs2015-py37

wesm

+1. The Windows builds are passing now

wesm · 2019-06-28T03:27:38Z

Crossbow builds https://github.com/wesm/crossbow/branches/all?utf8=%E2%9C%93&query=build-27

kszucs · 2019-06-28T12:57:14Z

@wesm thanks for fixing the windows builds. When use use [skip ci] pattern in the commit message, then ursabot will skip executing that particular commit. It is because we proxy the request to the standard PR building mechanism of buildbot.

pitrou changed the title ~~[ARROW-5511] Enable Flight in Conda packages~~ ARROW-5511: [Packaging] Enable Flight in Conda packages Jun 5, 2019

apache deleted a comment from ursabot Jun 26, 2019

lidavidm and others added 4 commits June 27, 2019 12:36

Enable Flight in Conda packages

e9c4cd6

bundle uriparser

d809fdf

pass ARROW_TEST_DATA

8765af1

export ARROW_TEST_DATA on the template level

f612508

xhochy reviewed Jun 27, 2019

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use SRC_DIR

e764a59

debug env vars

c0b95ac

skip tests instead

c1baa4c

Build Flight in Windows conda packages [skip ci]

55d2f41

Also build uriparser bundled in windows [skip ci]

909b798

wesm approved these changes Jun 28, 2019

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wesm closed this in a0c1c04 Jun 28, 2019

asfimport mentioned this pull request Jun 28, 2019

[Packaging] Enable Flight in Conda packages #21959

Closed

ARROW-5511: [Packaging] Enable Flight in Conda packages #4473

ARROW-5511: [Packaging] Enable Flight in Conda packages #4473

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ghost commented Jun 6, 2019 •

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